OrangerV1, Main, Exploration, bibRecord, 000289

Comparative Analysis of miRNAs and Their Target Transcripts between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild-Type Using Small RNA and Degradome Sequencing

Identifieur interne : 000289 ( Main/Exploration ); précédent : 000288; suivant : 000290

Comparative Analysis of miRNAs and Their Target Transcripts between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild-Type Using Small RNA and Degradome Sequencing

Auteurs : Juxun Wu ; Saisai Zheng ; Guizhi Feng ; Hualin Yi

Source :

Frontiers in Plant Science [ 1664-462X ] ; 2016.

RBID : PMC:5030777

Abstract

Fruit ripening in citrus is not well-understood at the molecular level. Knowledge of the regulatory mechanism of citrus fruit ripening at the post-transcriptional level in particular is lacking. Here, we comparatively analyzed the miRNAs and their target genes in a spontaneous late-ripening mutant, “Fengwan” sweet orange (MT) (Citrus sinensis L. Osbeck), and its wild-type counterpart (“Fengjie 72-1,” WT). Using high-throughput sequencing of small RNAs and RNA degradome tags, we identified 107 known and 21 novel miRNAs, as well as 225 target genes. A total of 24 miRNAs (16 known miRNAs and 8 novel miRNAs) were shown to be differentially expressed between MT and WT. The expression pattern of several key miRNAs and their target genes during citrus fruit development and ripening stages was examined. Csi-miR156k, csi-miR159, and csi-miR166d suppressed specific transcription factors (GAMYBs, SPLs, and ATHBs) that are supposed to be important regulators involved in citrus fruit development and ripening. In the present study, miRNA-mediated silencing of target genes was found under complicated and sensitive regulation in citrus fruit. The identification of miRNAs and their target genes provide new clues for future investigation of mechanisms that regulate citrus fruit ripening.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5030777

DOI: 10.3389/fpls.2016.01416
PubMed: 27708662
PubMed Central: 5030777

Affiliations:

Le document en format XML

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<front><div type="abstract" xml:lang="en"><p>Fruit ripening in citrus is not well-understood at the molecular level. Knowledge of the regulatory mechanism of citrus fruit ripening at the post-transcriptional level in particular is lacking. Here, we comparatively analyzed the miRNAs and their target genes in a spontaneous late-ripening mutant, “Fengwan” sweet orange (MT) (<italic>Citrus sinensis</italic>
 L. Osbeck), and its wild-type counterpart (“Fengjie 72-1,” WT). Using high-throughput sequencing of small RNAs and RNA degradome tags, we identified 107 known and 21 novel miRNAs, as well as 225 target genes. A total of 24 miRNAs (16 known miRNAs and 8 novel miRNAs) were shown to be differentially expressed between MT and WT. The expression pattern of several key miRNAs and their target genes during citrus fruit development and ripening stages was examined. Csi-miR156k, csi-miR159, and csi-miR166d suppressed specific transcription factors (<italic>GAMYBs, SPLs</italic>
, and <italic>ATHBs</italic>
) that are supposed to be important regulators involved in citrus fruit development and ripening. In the present study, miRNA-mediated silencing of target genes was found under complicated and sensitive regulation in citrus fruit. The identification of miRNAs and their target genes provide new clues for future investigation of mechanisms that regulate citrus fruit ripening.</p>
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<author><name sortKey="Chen, S Y" uniqKey="Chen S">S. Y. Chen</name>
</author>
<author><name sortKey="Chen, H" uniqKey="Chen H">H. Chen</name>
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<author><name sortKey="Chai, L J" uniqKey="Chai L">L. J. Chai</name>
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<biblStruct><analytic><author><name sortKey="Zuo, J H" uniqKey="Zuo J">J. H. Zuo</name>
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<author><name sortKey="Fu, D Q" uniqKey="Fu D">D. Q. Fu</name>
</author>
<author><name sortKey="Zhu, Y" uniqKey="Zhu Y">Y. Zhu</name>
</author>
<author><name sortKey="Qu, G Q" uniqKey="Qu G">G. Q. Qu</name>
</author>
<author><name sortKey="Tian, H Q" uniqKey="Tian H">H. Q. Tian</name>
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<author><name sortKey="Zhai, B Q" uniqKey="Zhai B">B. Q. Zhai</name>
</author>
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<biblStruct><analytic><author><name sortKey="Zuo, J H" uniqKey="Zuo J">J. H. Zuo</name>
</author>
<author><name sortKey="Zhu, B Z" uniqKey="Zhu B">B. Z. Zhu</name>
</author>
<author><name sortKey="Fu, D Q" uniqKey="Fu D">D. Q. Fu</name>
</author>
<author><name sortKey="Zhu, Y" uniqKey="Zhu Y">Y. Zhu</name>
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<author><name sortKey="Ma, Y Z" uniqKey="Ma Y">Y. Z. Ma</name>
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<author><name sortKey="Chi, L H" uniqKey="Chi L">L. H. Chi</name>
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<name sortKey="Wu, Juxun" sort="Wu, Juxun" uniqKey="Wu J" first="Juxun" last="Wu">Juxun Wu</name>
<name sortKey="Yi, Hualin" sort="Yi, Hualin" uniqKey="Yi H" first="Hualin" last="Yi">Hualin Yi</name>
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   |texte=   Comparative Analysis of miRNAs and Their Target Transcripts between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild-Type Using Small RNA and Degradome Sequencing
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Comparative Analysis of miRNAs and Their Target Transcripts between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild-Type Using Small RNA and Degradome Sequencing

Comparative Analysis of miRNAs and Their Target Transcripts between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild-Type Using Small RNA and Degradome Sequencing

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